CDS

Accession Number TCMCG016C17472
gbkey CDS
Protein Id OMO70977.1
Location join(58920..59749,60479..60547,60834..60941,61031..61211,61300..61376,61487..61606,61991..62096,62609..62695,62826..62894,62996..63067,63162..63305,63401..63544)
Organism Corchorus capsularis
locus_tag CCACVL1_18542

Protein

Length 668aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01011741.1
Definition RNA polymerase II-associated, Paf1 [Corchorus capsularis]
Locus_tag CCACVL1_18542

EGGNOG-MAPPER Annotation

COG_category K
Description RNA polymerase II-associated factor 1 homolog
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K15174        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04011        [VIEW IN KEGG]
map04011        [VIEW IN KEGG]
GOs GO:0000428        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008023        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0009909        [VIEW IN EMBL-EBI]
GO:0009910        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016569        [VIEW IN EMBL-EBI]
GO:0016570        [VIEW IN EMBL-EBI]
GO:0016571        [VIEW IN EMBL-EBI]
GO:0016591        [VIEW IN EMBL-EBI]
GO:0016593        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030880        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048580        [VIEW IN EMBL-EBI]
GO:0048581        [VIEW IN EMBL-EBI]
GO:0048831        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0051093        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051241        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0055029        [VIEW IN EMBL-EBI]
GO:0061695        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]
GO:2000242        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCCTCATATAGGCCATTCCCTCCACAGTCATTCCCTCCTCCACCATCCCAAAATCAAAACCCTCTTCCACCTCAACAACAACAACAGCAACAACAACATTATGGTCAAAATTACAATCAAATGAATCCAAATTCGAATTATTACCCTCCTTCTAGACCGCCCCAGCAACAACACCCACCACCACCACCACCCCCTCAACAGCAATATGCTTATCCTCCTCCGCCGCCTCCAGATGCTTCCTATCCACCTCCCCCACCTCCTCCTTCACAGCCACCAATGTACTATCCACCTTCACAGTATTCATCGCAGTATGGTAATCAAGGAATGCAGCCACCTCCTCCACCACCTCCCCCAAGTTCTCCAGGTTCTTCAATCCCTCCACCACCACCTCCCCCGAGTTCTCCTCCTCCACCTCCTCCAAAGGAGAGTGTTGGGGATAAGGGGTTAAGTGAACGCAATAAAGGGGGGAGTAGGGATTTTTCAGGGTCTGGAAGGCGTGAACATGGGCATTCCAATCATGGGGTCGGAGGTAGAGAGCAAAAGCCAATGTTGCCTCCTGCCAAGAAGCCGAATGGACCTGCAGGGAGGGTGGAGACAGAGGAGGAGAGAAGGTTGAGGAAAAAGAGGGAGTTTGAGAAGCAAAGACAAGAGGAGAAGCATAGGCAGCAGATGAAGGAGTCGCAGAAGACCCAGATGATGTCTGCCGGTAAAGGGCATGGTTCAATGGTAGGGTCGCGTATGGGAGATAGGAGGGCTACACCATTTTTGAGTGGTGAGAGGATTGAGAATAGGTTAAAGAAGCCAACAACGTTCTTGTGCAAGTTAAAATTCCGAAATGAACTTCCTGATCCAAGTGCACAGCCCAAACTCATGGCTTTGAAGAAAGATAAAGATCGGTTTACAAAATACACCATCACTTCTCTCGAGAAGATGTACAAGCCTAAACTCTTTGTTGAGCCGGATCTTGGGATACCACTGGACCTGCTTGACCTCAGTGTATACAATCCTCCTAGTGTTAGACCACCTCTTGCCCCTGAAGATGAGGAACTCTTGCGTGATGATGAAGCTGTAACTCCTATAAAGAAAGATGGTATAAGACGAAAAGAAAGACCCACTGACAAAGGTGTTTCATGGCTGGTTAAAACACAGTACATATCTCCGCTTAGTATGGAGTCAGCAAAACAGTCTTTGACTGAAAAGCAAGCAAAAGAACTGCGAGAACTTAAGGGAGGCCGCAATCTTTTGGAGAACCTTAACAGCAGGGAAAGACAAATCAAAGAAATTGAGGCATCATTTGAGGCATCCAAGTTGCGTCCTGTGCATGCAACCAATAAAAACTTAGAGCCTGTTGAAGTTATGCCCCTCTTCCCTGATTTCGAGCGGGAAAAAGATCAGTTCGCTTTGGTGTCATTTGATAATGCTCCTACAGCTGATTCTGAACTCTTTGGCAAGCTGCACGATTCCATTCGTGAGGAGCATGAATCGAGGGCCATTATGAAAAGTTATTCGACGGCAAGCTCAGATCCAGCTAATCCAGAGAAATTTTTGGCATACATGGTGCCTTCTGTGGATGAGCTTTCGAAGGATATGTATGATGAGCATGAAGATATCTCTTATTCTTGGGTTCGCGAATACCATTGGGATGTACGGGGTGATGATGCAAATGACCCTACGACATACCTTGTTTCGTTTGATGACGGAGTTGCTCGCTATGTGCCTCTTCCCACAAAGCTTAATTTAAGGAAAAAGAGGGCCAGAGAGGGAAGATCTGGGGATGAGATTGAACATTTCCCCATACCTGCTAGAATAACTGTGAGGAGAAGACCAACTGTTGCTGCAATAGAACTGAAAGAGCCAGAGGTTTATTCAAACTCAAGAGGTGGCATTTCAAGCTCAAAAGTAGGAAGGCTAGATGCTGAAGATGGCCTTGGAAGACCTCATAAACTTGCACGACACCAAGATGTTGATCAGTATAGCGGCGCTGAAGATGACTTGTCTGATTGA
Protein:  
MASYRPFPPQSFPPPPSQNQNPLPPQQQQQQQQHYGQNYNQMNPNSNYYPPSRPPQQQHPPPPPPPQQQYAYPPPPPPDASYPPPPPPPSQPPMYYPPSQYSSQYGNQGMQPPPPPPPPSSPGSSIPPPPPPPSSPPPPPPKESVGDKGLSERNKGGSRDFSGSGRREHGHSNHGVGGREQKPMLPPAKKPNGPAGRVETEEERRLRKKREFEKQRQEEKHRQQMKESQKTQMMSAGKGHGSMVGSRMGDRRATPFLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDEELLRDDEAVTPIKKDGIRRKERPTDKGVSWLVKTQYISPLSMESAKQSLTEKQAKELRELKGGRNLLENLNSRERQIKEIEASFEASKLRPVHATNKNLEPVEVMPLFPDFEREKDQFALVSFDNAPTADSELFGKLHDSIREEHESRAIMKSYSTASSDPANPEKFLAYMVPSVDELSKDMYDEHEDISYSWVREYHWDVRGDDANDPTTYLVSFDDGVARYVPLPTKLNLRKKRAREGRSGDEIEHFPIPARITVRRRPTVAAIELKEPEVYSNSRGGISSSKVGRLDAEDGLGRPHKLARHQDVDQYSGAEDDLSD